A data.frame of the genes.out output from MAGMA calculated using
rheumatoid arthritis summary statistics.
Format
ra_magma
A data.frame with 17,460 rows and 9 columns:
- GENE
entrez gene ID
- CHR
the chromosome the gene is on
- START
start boundary of the gene on the chromosome (including any provided window during annotation)
- END
end boundary of the gene on the chromosome (including any provided window during annotation)
- NSNPS
number of SNPS annotated to gene (not excluded based on internal SNP QC)
- NPARAM
number of relevant parameters used in the MAGMA model
- N
sample size used in analyzing the gene
- ZSTAT
z-value of gene based on permuted p-value (what we also term MAGMA z-score)
- P
gene p-value